init source

2025-08-08 13:11:33 +09:00
parent 02660627d2
commit 61d947a644
57 changed files with 1852863 additions and 0 deletions
--- a/public/jsonpathway.py
+++ b/public/jsonpathway.py
@@ -0,0 +1,83 @@
+import xml.etree.ElementTree as ET
+import json
+
+def parse_kegg_xml_with_group(xml_file):
+    tree = ET.parse(xml_file)
+    root = tree.getroot()
+
+    pathway_info = {
+        "name": root.attrib.get("name"),
+        "org": root.attrib.get("org"),
+        "number": root.attrib.get("number"),
+        "title": root.attrib.get("title"),
+        "image": root.attrib.get("image"),
+        "link": root.attrib.get("link"),
+        "entries": [],
+        "relations": [],
+        "reactions": []
+    }
+
+    for entry in root.findall("entry"):
+        entry_id = int(entry.attrib.get("id"))
+        entry_group = str((entry_id // 10000) * 10000) if entry_id >= 10000 else None
+        graphics = entry.find("graphics")
+        entry_data = {
+            "id": entry_id,
+            "name": entry.attrib.get("name"),
+            "type": entry.attrib.get("type"),
+            "link": entry.attrib.get("link"),
+            "reaction": entry.attrib.get("reaction"),
+            "group": entry_group,
+            "graphics": {
+                "name": graphics.attrib.get("name"),
+                "fgcolor": graphics.attrib.get("fgcolor"),
+                "bgcolor": graphics.attrib.get("bgcolor"),
+                "type": graphics.attrib.get("type"),
+                "x": int(graphics.attrib.get("x")),
+                "y": int(graphics.attrib.get("y")),
+                "width": int(graphics.attrib.get("width")),
+                "height": int(graphics.attrib.get("height")),
+            }
+        }
+        pathway_info["entries"].append(entry_data)
+
+    for relation in root.findall("relation"):
+        rel = {
+            "entry1": int(relation.attrib.get("entry1")),
+            "entry2": int(relation.attrib.get("entry2")),
+            "type": relation.attrib.get("type"),
+            "subtypes": []
+        }
+        for subtype in relation.findall("subtype"):
+            rel["subtypes"].append({
+                "name": subtype.attrib.get("name"),
+                "value": subtype.attrib.get("value")
+            })
+        pathway_info["relations"].append(rel)
+
+    for reaction in root.findall("reaction"):
+        reac = {
+            "id": int(reaction.attrib.get("id")),
+            "name": reaction.attrib.get("name"),
+            "type": reaction.attrib.get("type"),
+            "substrates": [],
+            "products": []
+        }
+        for substrate in reaction.findall("substrate"):
+            reac["substrates"].append({
+                "id": int(substrate.attrib.get("id")),
+                "name": substrate.attrib.get("name")
+            })
+        for product in reaction.findall("product"):
+            reac["products"].append({
+                "id": int(product.attrib.get("id")),
+                "name": product.attrib.get("name")
+            })
+        pathway_info["reactions"].append(reac)
+
+    return pathway_info
+
+# 사용 예:
+result = parse_kegg_xml_with_group("expanded_pathway43200.xml")
+with open("group43200.json", "w", encoding="utf-8") as f:
+    json.dump(result, f, ensure_ascii=False, indent=2)